Hi SikSan!
Gongratulations on this rare BFR! 
Internet diagnosis is not an easy thing to do, especially after the neck already went through two major "operations". I take it that you don't live in the USA, so sending the bass to EBMM Customer Service is not an option?
If so, it would be helpful if you provide some pictures, namely nut and first fret (parallel to the fretboard), bridge (same perspective) up and down the neck.
A truly warped neck is rare, but it happens. One way to diagnose this would be to play each string open and then each fret up the neck. Maybe prepare a piece of paper and mark the frets where the buzz is the strongest. There must be differences!
Do this with a staccato feel: medium attack and dampen.
If you find a lot of notes buzzing with staccato, try a second run and let them ring.
Let's take it from there.
Edit: All of the above is assuming that you play in standard tuning and with EB Slinkys. Also, the current setup should be reasonably even. I had most of my setup/buzz issues when trying out different strings (like dozens) - some needed no or minor adjustments, others took days to iron out.
Last edited by Stephen; 02-03-2021 at 04:06 AM.
Reason: Added tuning and strings.
SBMM Silhouette HSS
You can tune a bass but you can't tuna fish.
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