I have also noticed that "stacked" pickups are never quite a quiet as side by side humbucking pickups. I've noticed this with basses and with guitars. I have a Luke III, and yes with high levels of gain there is some hum. But it's NOTHING compared to the hum of a true single coil. I also have a G&L Legacy Special with Dimarzio Injectors, which are all stacked single coils, and they also have a bit more hum.
Part of this could be from that "shielding" effect, or it could be that to get a bit more of a "true" single coil sound, the two coils aren't exactly the same.
2007 Stingray 5 HS Cherry Burst / Maple FB / 3 Band EQ / Ceramic Pickups
2012 Stingray 5 H Pearl Blue / Rosewood FB / 3 Band EQ/ AlNiCo Pickup
2012 Steve Morse Morse Blueburst / Rosewood FB
2012 Luke III SSH Vintage Sunburst / Rosewood Neck
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