No, I'm pretty sure they've used the outside coils in both 2 and 4 positions, certainly for most the last 25 years. Was that the case back in '96? I can't say for sure, but tap on the pickup poles with a small screwdriver and you'll figure out what's what.
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Scroll down the page and look for the "Controls" tab. By all means try rotating the pickups anyway, no magnet swap necessary if you are only rotating the pickups. If you can make it work without the pickup wires causing problems, give it a try!
Also try adjusting the pickup heights a little. Changing the balance between pickups in the in-between positions might make the difference you need.