I thought the bridge pickup was just a little low and the neck is quite low. Adjusting them up as close as possible with no bad effects, can make a difference in how your guitar sounds. I was surprised to find no adjustment,this guitar is so nicely built, I mean its perfect except for the lack of adjustable pick ups. All my preavious guitars " Ibanez " have had adjustable..but none sound like this one, maybe JP feels this is the best possition. would be nice to easily tweak em though. Iwas thinking longer screws and little hard wood blocks under the sides of pick ups or little spacers much like a stack of washers but not all the little pieces.
I think it is interesting that anyone thinks they are low. Mine are certainly not near the strings but I wouldn't consider them low.
I like my action higher than stock, my pickups are probably the same distance from the strings as they were when the guitar left the factory.